Definitely not your intake, I have an injen CAI no problem... I then had a cat back toda exhaust put on.. it was raining the day it was installed... I drove home not problem, drove to the shops later that night and it felt like the exhaust hit the floor of the car and was vibrating the drivers seat (but no lose in power)... happened again once more and never again since.
I put it down to the exhaust settling in.

