Since your car is brand new, I'd seriously doubt you have a damaged gearbox/engine mount. Still, take it to Honda for some peace of mind. It sounds pretty normal.
Regarding the paint, It's very common for Honda paint to be damaged by bird droppings, even if it's only been on the paint for a couple of hours with some minor sun. It's pretty poor IMO. The best thing you could is get a professional detailer (Final Inspection if in Melb) to wet sand the area. But, no guarantee it will be removed.
Bookmarks