Nah, it's not a problem. Honda would call it a "feature"
It's from the drive by wire. When you accelerate and want to change gear, the instant you lift you foot of the throttle you get a slight surge of revs. It's for emissions purposes to burn any excess fuel. If you press the clutch pedal in at that instant, you get the vibration. To avoid it, lift you foot off the throttle and press clutch an instant later, about 1/4 of a second later.
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